2021

google-scholar-doctor-of-philosophy-univ

2020

2020

2019

2017

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2020

Synthetic protein-conductive membrane nanopores built with DNA

Diederichs, T.G. Pugh, A. DoreyY. Xing, J.R. Burns, Q.H. Nguyen, M. Tornow, R. Tampé, S. Howorka

Nat Commun, 10: 5018 (2019)

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2020

Exploring the Relationship between BODIPY Structure and Spectroscopic Properties to Design Fluorophores for Bioimaging

Donnelly, J. L. , D. Offenbartl‐Stiegert, J. M. Marín‐Beloqui, L. Rizzello, G. Battaglia, T. M. Clarke, S. Howorka and J. D. Wilden

Chem. – A Eur. J., 25, (2019)

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2020

Solvent-dependent Photophysics of a Red-shifted, Biocompatible Coumarin Photocage

Offenbartl-Stiegert, D., T. M. Clarke, H. Bronstein, H. P. Nguyen and S. Howorka

Org. Biomol. Chem., 17: 6178-6183 (2019)

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2020

Structural and Functional Stability of DNA Nanopores in Biological Media

Burns, J. R., S. Howorka

Nanomaterials, 9(4): 490 (2019)

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2020

Cholesterol Anchors Enable Efficient Binding and Intracellular Uptake of DNA Nanostructures

Whitehouse, W. L. , J. E. Noble, M. G. Ryadnov, S. Howorka

Bioconjugate Chem., 30(7): 1836-1844 (2019)

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Opto‐epigenetic modulation of DNA methylation with a photo‐responsive small‐molecule approach

Nguyen, H.P., S. Stewart, M. N. Kukwikila, S. Fôn Jones, D. Offenbartl-Stiegert, S. Mao, S. Balasubramanian, S. Beck, S. Howorka

Angew. Chem. Int. Ed., 58(20): 6620-6624 (2019)

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Spatial presentation of cholesterol units on a DNA cube as a determinant of membrane protein-mimicking functions

Chidchob, P.,  D. Offenbartl-Stiegert, D. McCarthy, X. Luo, J. Li, S. Howorka, H.F. Sleiman

J. Am. Chem. Soc., 141(2): 1100-1108 (2019)

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DNA Nanodevices with Selective Immune Cell Interaction and Function

Arulkumaran N., C. Lanphere, C. Gaupp, J. R. Burns, M. Singer, and S.Howorka

ACS Nano Article ASAP

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Design, assembly, and characterization of membrane-spanning DNA nanopores. 

Lanphere C., D. Offenbartl-Stiegert, A. Dorey, G. Pugh, E. Georgiou, Yo. Xing, J. R. Burns, S.Howorka

Nat Protoc 16, 86–130 (2021)

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A Biomimetic DNA‐Based Membrane Gate for Protein‐Controlled Transport of Cytotoxic Drugs

Lanphere, C. , P. Arnott, S. Fôn Jones, K. Korlova S. Howorka

Angew. Chem. Int. Ed., 59: 2-8, (2020)

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Reading amino acids in a nanopore

Howorka, S. and Z. S. Siwy

Nat Biotechnol, (2020)

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2020

Dynamic interactions between lipid-tethered DNA and phospholipid membranes

Arnott, P. M. , J. Himanshu, A. Aksimentiev, S. Howorka 

Langmuir, 34(49): 15084-15092, Cover (2018)

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2020

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Nanopores and Nanochannels: From Gene Sequencing to Genome Mapping

S. Howorka, Z. Siwy

ACS Nano, 10(11): 9768–9771 (2016)

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2020

Biomimetic Hybrid Nanocontainers with Selective Permeability

Messager, L., J. R. Burns, D. Cecchin, J. Hindley, A. L. B. Pyne, J. Gaitzsch, G. Battaglia, S. Howorka

Angew Chem Int Ed, 55(37): 11106–11109 (2016)

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2020

Changing of the Guard: DNA Nanostructures Mimic Membrane Proteins

S. Howorka 

Science, 352(6288): 890-891 (2016)

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2020

Co-Immobilization of Proteins and DNA Origami Nanoplates to Produce High-Contrast Biomolecular Nanoarrays

Hager, R., J. R. Burns, M. J. Grydlik, A. Halilovic, T. Haselgrübler, F. Schäffler, S. Howorka 

Small, 12(21): 2877–2884 (2016)

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2018

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Building membrane nanopores

S. Howorka

Nat Nanotechnol, 12: 619-630 (2017)

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DNA nanotechnology: Bringing lipid bilayers into shape

S. Howorka

Nat Chem, 9: 611-613 (2017)

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2020

Stability and Dynamics of Membrane-Spanning DNA Nanopores

Maingi, V., J. R. Burns, J. J. Uusitalo, S. Howorka, S. J. Marrink, M. S. P. Sansom

Nat Commun, 8: 14784 (2017)

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2020

Arrays of Individual DNA Molecules on Nanopatterned Substrates

Roland, H., A. Halilovic, J. R. Burns, F. Schäffler, S. Howorka

Sci Rep, 7: 42075 (2017)

2016

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2020

Gating-like Motions and Wall Porosity in a DNA Nanopore Scaffold Revealed by Molecular Simulations

Maingi, V., M. Lelimousin, S. Howorka, M. Sansom

ACS Nano, 9(11): 11209–11217 (2015)

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Dendrimers in Nanoscale Confinement: The Interplay between Conformational Change and Nanopore Entrance

Ficici, E., I. Andricioaei, S. Howorka 

Nano Lett, 5(7): 4822-4828 (2015)

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2020

Nanopore-Based Electrical and Label-Free Sensing of  Enzyme Activity in Blood Serum

Kukwikila, M., S. Howorka

Anal Chem, 87(18): 9149–9154 (2015)

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2020

Bilayer-Spanning DNA Nanopores with Voltage-Switching between Open and Closed State

Seifert, A., K. Göpfrich, J. R. Burns, N.Fertig, U.F. Keyser, S. Howorka

ACS Nano, 9(2): 1117-1126, Cover (2015)

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2020

S-layer Structure in Bacteria and Archaea

C. Madhurantakam, S. Howorka, H. Remaut 

In: Nanomicrobiology L. L. Barton et al. (eds.), Springer Science+ Business Media New York, 11-37 (2014)

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Membrane-Spanning DNA Nanopores with Cytotoxic Effect 

Burns, J. R., N. Al-Juffali, S. M. Janes, S. Howorka

Angew Chem Int Ed 53(46): 12466-12470 (2014)

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2020

DNA-Modified Polymer Pores Allow pH and Voltage-Gated Control of Channel Flux

S. Buchsbaum, G. Nguyen, S. Howorka, Z. Siwy

J Am Chem Soc, 136(28): 9902-9905 (2014)

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Involvement of SbsB in Ca2+ Triggered S-Layer Assembly

C. Madhurantakam, S. Howorka, H. Remaut (2014) 

Encyclopedia of Inorganic and Bioinorganic Chemistry, John Wiley & Sons, 2-8.

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2020

Structure and Mechanism of the Bacterial Protein Secretion Channel CsgG

Goyal, P., P. V. Krasteva, N. Van Gerven, F. Gubellini, I. Van den Broeck, A. Troupiotis-Tsaïlaki, W. Jonckheere, G. Péhau-Arnaudet, J. S. Pinkner, M. R. Chapman, S. J. Hultgren, S. Howorka, R. Fronzes, H. Remaut 

Nature, 516(7530): 250-253 (2014)

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2020

Microarrays and Single Molecules: An Exciting Combination

S. Howorka, J. Hesse 

Soft Matter, 10(7): 931–941 (2014)

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2020

Lipid Bilayer-Spanning DNA Nanopores with a Bifunctional Porphyrin Anchor

Burns, J. R., K. Göpfrich, J. W. Wood, V. V. Thacker, E. Stulz, U. F. Keyser, S. Howorka

Angew Chem Int Ed, 52(46): 12069–12072 (2013)

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Disentangling Steric and Electrostatic Factors in Nanoscale Transport Through Confined Space

Buchsbaum, S., N. Mitchell, M. Hugh, M. Wiggin, A. Marziali, P. V. Coveney, S. Ziwy, S. Howorka

Nano Lett, 13(8): 3890–3896 (2013)

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Self-Assembled DNA Nanopores that Span Lipid Bilayers

Burns, J., Stulz, E., S. Howorka 

Nano Lett, 13(6): 2351-2356 (2013)

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2020

DNA Nanoarchitectonics: Assembled DNA at Interfaces

S. Howorka  

Langmuir, invited review, 29(24):7344-7353. Cover. (2013)

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Nanopores as Protein Sensors

S. Howorka, Z. Siwy

Nat Biotechnol, 30(6), 507-508 (2012)

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SbsB Structure and Lattice Reconstruction Unveil Ca2+ Triggered S-layer Assembly

Baranova, E., Fronzes, R., Garcia-Pino, A., Papapostolou, D., Péhau-Arnaudet, G., Pardon, E., Steyaert, S., Howorka, S., Remaut, H.

Nature, 487(405): 119-122 (2012)

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2020

Painting with Biomolecules at the Nanoscale: Biofunctionalization with Tunable Surface Densities

Schlapak, R., Danzberger, J., Haselgruebler, T., Hinterdorfer, P., Schäffler, F., Howorka, S. 

Nano Lett, 12(4), 1983–1989 (2012)

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2020

Microarrays and Single Molecules: An Exciting Combination

S. Howorka, J. Hesse 

Soft Matter, 10(7): 931–941 (2014)

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2020

Nanoscale DNA Tetrahedra Improve Biomolecular Recognition on Patterned Surfaces

Schlapak, R., J. Danzberger, D. Armitage, D. Morgan, P. D. Pollheimer, H. J. Gruber, F. Schäffler, S. Howorka 

Small, 8(1): 89-97 (2012)

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Single-Molecule AFM Characterization of Individual Chemically Tagged DNA Tetrahedra

Leitner, M., N. Mitchell, M. Kastner, R. Schlapak, H. J. Gruber, P. Hinterdorfer, S. Howorka, A. Ebner 

ACS Nano, 5(9): 7048-7054 (2011)

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The structure of Bacterial S-layer Proteins

Pavkov-Keller, T., S. Howorka, W. Keller 

In: Molecular Assembly in Natural and Engineered Systems, Series title: Progress in Molecular Biology and Translational Science, Academic Press, Editor: S. Howorka: 73-130 (2011)

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Rationally Engineering Natural Protein Assemblies in Nanobiotechnology 

S. Howorka

Curr Opin Biotechnol, 22: 485-491 (2011)

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Nanoimaging, Molecular Interaction, and Nanotemplating of Human Rhinovirus Nanopores

Kastner, M., C. Rankl, A. Ebner, P. D. Pollheimer, S. Howorka, H. J. Gruber, D. Blaas, P. Hinterdorfer 

In: Scanning Probe Microscopy in Nanoscience and Nanotechnology, Vol.2., Editor, B. Bhushan, Springer-Verlag, Heidelberg (2011)

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DNA Strands Attached Inside Single Conical Nanopores: Ionic Pore Characteristics and Insight into DNA Biophysics

Nguyen, G., S. Howorka, Z. S. Siwy 

J Membr Biol, 239(1-2): 105-13 (2011)

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Improved Kelvin Probe Force Microscopy for Imaging Individual DNA Molecules on Insulating Surfaces

Carl Leung, Dario Maradan, Armin Kramer, Stefan Howorka, Patrick Mesquida and Bart W Hoogenboom 

Appl Phys Lett, 97, 203703 (2010)

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2020

Biosensors and Biofuel Cells with Engineered Proteins

Caruana, D. J., S. Howorka

Mol Biosyst, 6(8): 1548 - 1556 (2010)

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Nanomechanical Recognition Measurements of Individual DNA Molecules Reveals Epigenetic Methylation Patterns

Zhu, R., S. Howorka, J. Pröll, F. Kienberger, J. Preiner, J. Hesse, A. Ebner, V. P. Pastushenko, H. J. Gruber, P. Hinterdorfer

Nature Nanotechnol, 5(11): 788-791 (2010)

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2020

Interfacial Dipole Dynamics of Light-Emitting Diodes Incorporating a Poly(amidoamine) Dendrimer Monolayer

Winroth, G., O. Fenwick, M. A. Scott, D. Yip, S. Howorka, F. Cacialli 

Appl Phys Lett, 97(4): 043304 (2010)  

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Electrically Sensing Protease Activity with Nanopores

Kukwikila, M., S. Howorka 

J Physics, 22(45): 454103 (2010)

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2020

Chemical Tags Mediate the Self-Assembly of DNA Strands into Supramolecular Structures

Mitchell, N., A. Ebner, P. Hinterdorfer, R. Tampe, S. Howorka 

Small, 6(16): 1732–1735 (2010)

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2020

Identifying Assembly-Inhibiting and Assembly-Tolerant Sites in the SbsB S-Layer Protein from Geobacillus stearothermophilus

Kinns, H., H. Badelt-Lichtblau, E.M. Egelseer, U.B. Sleytr, S. Howorka 

J Mol Biol, 395(4): 742-753 (2010)

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Engineered Voltage-Responsive Nanopores

Siwy, Z., S. Howorka 

Chem Soc Rev, 39(3): 1115-1132 (2010).

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2020

Semipermeable Poly(ethylene glycol) Films: The Relationship between Permeability and Molecular Structure of Polymer Chains

Schlapak, R., D. Caruana, D. Armitage, S. Howorka 

Soft Matter, 5(21): 4104-4112 (2009)

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2020

Synthesis and Enzymatic Incorporation of Modified Deoxyuridine Triphosphates

Borsenberger, V., M. Kukwikila, S. Howorka

Org Biomol Chem, 7(18): 3826-3835 (2009)

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2020

Topography and Recognition Imaging of Protein Patterned Surfaces Generated by AFM Nanolithography

Zhu, R. A. Ebner, M. Kastner, J. Preiner, S. Howorka, P. Hinterdorfer 

ChemPhysChem, 10(9-10):1478-81 (2009)

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2020

Imaging Surface Charges of Individual Biomolecules 

Leug, C., H. Kinns, B. Hoogenboom , S. Howorka , P. Mesquida 

Nano Lett, 9(7): 2769-2773 (2009)

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2020

Chemically Labeled Nucleotides and Oligonucleotides Encode DNA for Sensing with Nanopores

Borsenberger, V., N. Mitchell, Howorka, S. 

J Am Chem Soc, 131(22): 7530-7531 (2009)

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Nanopore Analytics: Sensing of Single Molecules

Howorka, S., Z. Siwy

Chem Soc Rev, 38(8): 2360-2384 (2009)

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2020

Engineering and Exploiting Protein Assemblies in Synthetic Biology

Papapostolou, D., S. Howorka

Mol Biosyst, 5(7): 723-732 (2009)

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2020

Receptor Arrays for the Selective and Efficient Capturing of Viral Particles

Pollheimer, P. D., M. Kastner, A. Ebner, D. Blaas, P. Hinterdorfer, H. J. Gruber, S. Howorka 

Bioconjug Chem, 20(3): 466–475 (2009)

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Diene-Modified Nucleotides for the Diels-Alder-Mediated Functional Tagging of DNA 

Borsenberger, V., S. Howorka 

Nucleic Acids Res, 37(5): 1477-1485 (2009)

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2020

Selective Protein and DNA Adsorption on PLL-PEG Films Modulated by Ionic Strength

Schlapak, R., D. Armitage, N. Saucedo-Zeni, W. Chrzanowski, M. Hohage, D. Caruana, S. Howorka

Soft Matter, 5(3): 613-621. Cover. (2009)

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A DNA Nanostructure for the Functional Assembly of Chemical Groups at Tunable Stoichiometry and Defined Nanoscale Geometry

Mitchell, N., R. Schlapak, M. Kastner, D. Armitage, W. Chrzanowski, J. Riener, P. Hinterdorfer, A. Ebner, S. Howorka 

Angew Chem Int Ed, 48(3): 525-7 (2009)

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2020

Nanopores: Generation, Engineering and Single-Molecule Applications

Howorka, S., Z. Siwy 

In: Handbook of Single-Molecule Biophysics, Springer (2008)  

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Chemical Tags Facilitate the Detection of Individual DNA Strands with Nanopores

Mitchell, N., S. Howorka 

Angew Chem Int Ed, 47(30): 5565-5568. Cover. (2008)

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Atomic Force Microscopy-Based Nano-Chip for the Detection of Human Pathogenic Viruses

Artelsmair, H., F. Kienberger, A. Tinazli, R. Schlapak, J. Preiner, J. Wruss, M. Kastner, N. Saucedo-Zeni, M. Hoelzl, C. Rankl, W. Baumgartner, S. Howorka, D. Blaas, H. J. Gruber, R. Tampé, P. Hinterdorfer

Small, 4(6): 847-54 (2008)

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2020

The Surface Location of Individual Residues in a Bacterial S-Layer Protein

Kinns, H., S. Howorka 

J Mol Biol, 377(2): 589-604 (2008)

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Self-Assembled Monolayers of Protonated Poly(amidoamine) Dendrimers on Indium-Tin-IOxide Electrodes

Latini, G., M. Wykes, R. Schlapak, S. Howorka,  F. Cacialli 

Appl Phys Lett, 92(1): 013511 (2008)

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2020

Stochastic Detection of Motor Protein-RNA Complexes by Single-Channel Current Recording 

Astier, Y., D. E. Kainov, H. Bayley, R. Tuma and S. Howorka 

ChemPhysChem 8(15): 2189-2194 (2007)

 

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Creating Regular Arrays of Nanoparticles with Self-Assembling Protein Building Blocks 

Howorka, S. 

J Mater Chem 17(20): 2049-2053. Cover. (2007)

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Nanoscale Protein Pores Modified with PAMAM Dendrimers

Martin, H., H. Kinns, N. Mitchell, R. Madathil and S. Howorka 

J Am Chem Soc, 129(31): 9640-9649 (2007)

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Dense Passivating Poly(ethylene glycol) Films on Indium Tin Oxide Substrates 

Schlapak, R., D. Armitage, N. Saucedo-Zeni, M. Hohage, S. Howorka

Langmuir,  23(20): 10244-10253 (2007)

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Preparation and Characterization of Dense Films of Poly(amidoamine) Dendrimers on Indium Tin Oxide

Schlapak, R., D. Armitage, N. Saucedo-Zeni, G. Latini, H. J. Gruber, Y. Samotskaya, P. Mesquida, F. Cacialli, M. Hohage and S. Howorka 

Langmuir, 23(17): 8916-8924 (2007)

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2020

Single-Molecule Microscopy Reveals Heterogeneous Dynamics of Lipid Raft Components upon TCR Engagement 

Drbal, K., M. Moertelmaier, C. Holzhauser, A. Muhammad, E. Fuertbauer, S. Howorka, M. Hinterberger, H. Stockinger and G. J. Schutz 

Int Immunology, 19(5): 675-684 (2007)

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2020

Sizing Trinucleotide Repeat Sequences by Single-molecule Analysis of Fluorescence Brightness

Schlapak, R., H. Kinns, C. Wechselberger, J. Hesse and S. Howorka 

ChemPhysChem, 8(11): 1618-1621 (2007)

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2020

Glass Surfaces Grafted with High-density Poly(ethylene glycol) as Substrates for DNA Oligonucleotide Microarrays

Schlapak, R., P. Pammer, D. Armitage, R. Zhu, P. Hinterdorfer, M. Vaupel, T. Fruhwirth and S. Howorka

Langmuir, 22(1): 277-285. Featured in Biophotonics International, March 2006. (2006)

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RNA Expression Profiling at the Single-molecule Level

Hesse, J., J. Jacak, M. Kasper, G. Regl, T. Eichberger, M. Winklmayr, F. Aberger, M. Sonnleitner, R. Schlapak, S. Howorka, L. Muresan, A. M. Frischauf and G. J. Schutz 

Genome Res, 16(8): 1041-1045. Highlighted in Perspectives section of Genome Research. (2006)

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Nanopatterning of Biomolecules with Microscale Beads 

Pammer, P., R. Schlapak, M. Sonnleitner, A. Ebner, R. Zhu, P. Hinterdorfer, O. Höglinger, H. G. Schindler and S. Howorka 

ChemPhysChem, 6(5): 900-903 (2005)

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2020

Protein Components for Nanodevices

Astier, Y., H. Bayley and S. Howorka 

Curr Opin Chem Biol, 9(6): 576-584 (2005)

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2020

Stochastic Detection of Monovalent and Multivalent Protein-ligand Interactions 

Howorka, S., J. Nam, H. Bayley and D. Kahne

Angew Chem Int Ed Engl, 43(7): 842-846 (2004)

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2020

Probing Distance and Electrical Potential within a Protein Pore with Tethered DNA 

Howorka, S. and H. Bayley

Biophys J, 83(6): 3202-3210 (2002)

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2020

High-throughput Scanning Mutagenesis by Recombination PCR

Howorka, S. and H. Bayley 

In: In vitro Mutagenesis Protocols, Methods in Molecular Biology. J. Braman. Totowa, NJ, Humana Press: 139-147 (2002)

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Location of a Constriction in the Lumen of a Transmembrane Pore by Targeted Covalent Attachment of Polymer Molecules

Movileanu, L., S. Cheley, S. Howorka, O. Braha and H. Bayley 

J Gen Physiol, 117(3): 239-252 (2001)

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Sequence-specific Detection of Individual DNA-strands using Engineered Nanopores

Howorka, S., S. Cheley and H. Bayley 

Nat Biotechnol, 19(7): 636-39. Featured in News and Views of issue. (2001)

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Kinetics of Duplex Formation for Individual DNA Strands within a Single Protein Nanopore

Howorka, S., L. Movileanu, O. Braha and H. Bayley

Proc Natl Acad Sci U S A, 98(23): 12996-13001 (2001)

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A Protein Pore with a Single Polymer Chain Tethered within the Lumen

Howorka, S., L. Movileanu, X. Lu, M. Magnon, S. Cheley, O. Braha and H. Bayley 

J Am Chem Soc, 122(11): 2411-2416. Editors' Choice in Science (2000) 287(5460): 1889-1890. (2000)

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Detecting Protein Analytes that Modulate Transmembrane Movement of a Polymer Chain within a Single Protein Pore

Movileanu, L., S. Howorka, O. Braha and H. Bayley 

Nat Biotechnol, 18(10): 1091-1095. Cover and News and Views. Equally contributing co-authorship. (2000)

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2020

Surface Accessible Residues in the Monomeric and Assembled Form of a Bacterial Surface Layer Protein

Howorka, S., M. Sára, Y. Wang, B. Kuen, U. B. Sleytr, W. Lubitz and H. Bayley 

J Biol Chem, 48: 37876-37886. Cover. (2000)

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Improved Protocol for High Through-put Cysteine Scanning Mutagenesis

Howorka, S. and H. Bayley 

BioTechniques, 25(5): 764-772 (1998)

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2020

Biotechnological Applications of Recombinant S-layer Proteins rSbsA and rSbsB from B. Stearothermophilus PV72 

Truppe, M., S. Howorka, G. Schroll, S. Lechleitner, S. Resch, B. Kuen and W. Lubitz

(1997) FEMS Microbiol Rev, 20(1-2): 88-98.

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2-D Protein Crystals as an Immobilization Matrix for Producing Reaction Zones in Dipstick-style Immunoassays

Breitwieser, A., S. Kupcu, S. Howorka, S. Weigert, C. Langer, K. Hoffmann Sommergruber, O. Scheiner, U. B. Sleytr and M. Sára

BioTechniques, 21(5): 918-925 (1996) 

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